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1

A comparative study of different machine learning methods on microarray gene expression data

Mehdi Pirooznia, Jack Y Yang, Mary Qu Yang, Youping Deng

Journal:

Year:

2008

Language:

english

File:

PDF, 698 KB

english, 2008

2

Multi-label Deep Learning for Gene Function Annotation in Cancer Pathways

Guan, Renchu, Wang, Xu, Yang, Mary Qu, Zhang, Yu, Zhou, Fengfeng, Yang, Chen, Liang, Yanchun

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.22 MB

english, 2018

3

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - A hybrid iterative approach for microarray missing value estimation

Chong He,, Changbo Zhao,, Guo-Zheng Li,, Wei Zhu,, Yang, William, Mary Qu Yang,

Year:

2016

Language:

english

File:

PDF, 176 KB

english, 2016

4

[IEEE 2017 International Conference on Computational Science and Computational Intelligence (CSCI) - Las Vegas, NV, USA (2017.12.14-2017.12.16)] 2017 International Conference on Computational Science and Computational Intelligence (CSCI) - From Blockchain to Internet-Based Voting

Akbari, Elham, Wu, Qing, Zhao, Wenbing, Arabnia, Hamid R., Yang, Mary Qu

Year:

2017

Language:

english

File:

PDF, 582 KB

english, 2017

5

[IEEE 2017 International Conference on Computational Science and Computational Intelligence (CSCI) - Las Vegas, NV, USA (2017.12.14-2017.12.16)] 2017 International Conference on Computational Science and Computational Intelligence (CSCI) - Secure Privacy Preserving across Personal Health Data and Single Cell Genomics Research INSPIRE Academic Pedagogy — Merging Big Data Multiplatform with Deep Learning

Yang, Mary Qu, Yu, Shucheng, Cruz-Neira, Carolina, Yang, William, Tudoreanu, M. Eduard, Li, Dan, Zhang, Yifan, He, Qingfang, Guan, Renchu, Wang, Richard Y., Zhao, Wenbing

Year:

2017

Language:

english

File:

PDF, 9 KB

english, 2017

6

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features

Liangjiang Wang, Caiyan Huang, Mary Qu Yang, Jack Y Yang

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.08 MB

english, 2010

7

3D Protein structure prediction with genetic tabu search algorithm

Xiaolong Zhang, Ting Wang, Huiping Luo, Jack Y Yang, Youping Deng, Jinshan Tang, Mary Qu Yang

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 3.42 MB

english, 2010

8

Combining support vector regression with feature selection for multivariate calibration

Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang

Journal:

Neural Computing and Applications

Year:

2009

Language:

english

File:

PDF, 383 KB

english, 2009

9

Rfx6 directs islet formation and insulin production in mice and humans

Smith, Stuart B., Qu, Hui-Qi, Taleb, Nadine, Kishimoto, Nina Y., Scheel, David W., Lu, Yang, Patch, Ann-Marie, Grabs, Rosemary, Wang, Juehu, Lynn, Francis C.

Journal:

Year:

2010

Language:

english

File:

PDF, 1002 KB

english, 2010

10

Removal of bentazone from micro-polluted water using MIEX resin: Kinetics, equilibrium, and mechanism

Zequn Liu, Xiaomin Yan, Mary Drikas, Danong Zhou, Dongsheng Wang, Min Yang, Jiuhui Qu

Journal:

Journal of Environmental Sciences

Year:

2011

Language:

english

File:

PDF, 145 KB

english, 2011

11

Dimension reduction with redundant gene elimination for tumor classification

Xue-Qiang Zeng, Guo-Zheng Li, Jack Y Yang, Mary Qu Yang, Geng-Feng Wu

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 547 KB

english, 2008

12

Comparative analyses of bidirectional promoters in vertebrates

Mary Qu Yang, James Taylor, Laura Elnitski

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.33 MB

english, 2008

13

Asymmetric bagging and feature selection for activities prediction of drug molecules

Guo-Zheng Li, Hao-Hua Meng, Wen-Cong Lu, Jack Y Yang, Mary Qu Yang

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 349 KB

english, 2008

14

Prediction of DNA-binding residues from protein sequence information using random forests

Liangjiang Wang, Mary Qu Yang, Jack Y Yang

Journal:

Year:

2009

Language:

english

File:

PDF, 559 KB

english, 2009

15

Comparison of feature selection and classification for MALDI-MS data

Qingzhong Liu, Andrew H Sung, Mengyu Qiao, Zhongxue Chen, Jack Y Yang, Mary Qu Yang, Xudong Huang, Youping Deng

Journal:

Year:

2009

Language:

english

File:

PDF, 322 KB

english, 2009

16

High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics

Mary Qu Yang, Brian D Athey, Hamid R Arabnia, Andrew H Sung, Qingzhong Liu, Jack Y Yang, Jinghe Mao, Youping Deng

Journal:

Year:

2009

Language:

english

File:

PDF, 191 KB

english, 2009

17

Word-based characterization of promoters involved in human DNA repair pathways

Jens Lichtenberg, Edwin Jacox, Joshua D Welch, Kyle Kurz, Xiaoyu Liang, Mary Qu Yang, Frank Drews, Klaus Ecker, Stephen S Lee, Laura Elnitski, Lonnie R Welch

Journal:

Year:

2009

Language:

english

File:

PDF, 3.14 MB

english, 2009

18

Promoting synergistic research and education in genomics and bioinformatics

Jack Y Yang, Mary Qu Yang, Mengxia (Michelle) Zhu, Hamid R Arabnia, Youping Deng

Journal:

Year:

2008

Language:

english

File:

PDF, 215 KB

english, 2008

19

Prediction-based approaches to characterize bidirectional promoters in the mammalian genome

Mary Qu Yang, Laura L Elnitski

Journal:

Year:

2008

Language:

english

File:

PDF, 283 KB

english, 2008

20

Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition

Tanwir Habib, Chaoyang Zhang, Jack Y Yang, Mary Qu Yang, Youping Deng

Journal:

Year:

2008

Language:

english

File:

PDF, 396 KB

english, 2008

21

Supervised learning-based tagSNP selection for genome-wide disease classifications

Qingzhong Liu, Jack Yang, Zhongxue Chen, Mary Qu Yang, Andrew H Sung, Xudong Huang

Journal:

Year:

2008

Language:

english

File:

PDF, 239 KB

english, 2008

22

Diversity of core promoter elements comprising human bidirectional promoters

Mary Qu Yang, Laura L Elnitski

Journal:

Year:

2008

Language:

english

File:

PDF, 1.30 MB

english, 2008

23

Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

Christopher J Oldfield, Jingwei Meng, Jack Y Yang, Mary Qu Yang, Vladimir N Uversky, A Keith Dunker

Journal:

Year:

2008

Language:

english

File:

PDF, 1.23 MB

english, 2008

24

Investigation of transmembrane proteins using a computational approach

Jack Y Yang, Mary Qu Yang, A Keith Dunker, Youping Deng, Xudong Huang

Journal:

Year:

2008

Language:

english

File:

PDF, 429 KB

english, 2008

25

A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions

Jack Y Yang, Mary Qu Yang, Zuojie Luo, Yan Ma, Jianling Li, Youping Deng, Xudong Huang

Journal:

Year:

2008

Language:

english

File:

PDF, 1.47 MB

english, 2008

26

Predicting protein disorder by analyzing amino acid sequence

Jack Y Yang, Mary Qu Yang

Journal:

Year:

2008

Language:

english

File:

PDF, 373 KB

english, 2008

27

Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research

Jack Y Yang, Mary Qu Yang, Hamid R Arabnia, Youping Deng

Journal:

Year:

2008

Language:

english

File:

PDF, 303 KB

english, 2008

28

Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes

Jack Y Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng

Journal:

Year:

2008

Language:

english

File:

PDF, 285 KB

english, 2008

29

Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection

Jack Y Yang, Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Youping Deng

Journal:

Year:

2008

Language:

english

File:

PDF, 339 KB

english, 2008

30

ILOOP - a web application for two-channel microarray interwoven loop design

Mehdi Pirooznia, Ping Gong, Jack Y Yang, Mary Qu Yang, Edward J Perkins, Youping Deng

Journal:

Year:

2008

Language:

english

File:

PDF, 631 KB

english, 2008

31

Selecting subsets of newly extracted features from PCA and PLS in microarray data analysis

Guo-Zheng Li, Hua-Long Bu, Mary Qu Yang, Xue-Qiang Zeng, Jack Y Yang

Journal:

Year:

2008

Language:

english

File:

PDF, 347 KB

english, 2008

32

Differential expression of human telomerase catalytic subunit mRNA byIn situhybridization in pheochromocytomas

Zuojie Luo, Jianling Li, Yinfen Qin, Yan Ma, Xinghuan Liang, Jing Xian, Decheng Lu, Minyi Wei, Jack Y. Yang, Mary Qu Yang, Zhiheng He

Journal:

Endocrine Pathology

Year:

2006

Language:

english

File:

PDF, 4.22 MB

english, 2006

33

[IEEE Second International Multi-Symposiums on Computer and Computational Sciences (IMSCCS 2007) - Iowa City, IA, USA (2007.08.13-2007.08.15)] Second International Multi-Symposiums on Computer and Computational Sciences (IMSCCS 2007) - Asymmetric Bagging and Feature Selection for ActivitiesPrediction of Drug Molecules

Meng, Guo-Zheng Li, Hao-Hua, Yang, Mary Qu, Yang, Jack Y.

Year:

2007

Language:

english

File:

PDF, 365 KB

english, 2007

34

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - IEEE 7th BIBE Keynote: Promoter studies in the human genome: one perspective on an unfinished story

Yang, Mary Qu, Elnitski, Laura L.

Year:

2007

Language:

english

File:

PDF, 136 KB

english, 2007

35

[IEEE 2005 ICSC Congress on Computational Intelligence Methods and Applications - Istanbul, Turkey (15-17 Dec. 2005)] 2005 ICSC Congress on Computational Intelligence Methods and Applications - Computational Intelligence - A Broad Initiative in Automated Learning from Sequences

Mary Qu Yang,, Yang, J.Y., Ersoy, O.K.

Year:

2005

Language:

english

File:

PDF, 607 KB

english, 2005

36

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification

Bu, Hua-Long, Li, Guo-Zheng, Zeng, Xue-Qiang, Yang, Jack Y., Yang, Mary Qu

Year:

2007

Language:

english

File:

PDF, 1.33 MB

english, 2007

37

[IEEE 2005 ICSC Congress on Computational Intelligence Methods and Applications - Istanbul, Turkey (15-17 Dec. 2005)] 2005 ICSC Congress on Computational Intelligence Methods and Applications - Data Mining and Knowledge Discovery from Membrane Proteins

Yang, J.Y., Mary Qu Yang,, Ersoy, O.K.

Year:

2005

Language:

english

File:

PDF, 432 KB

english, 2005

38

[IEEE 2005 ICSC Congress on Computational Intelligence Methods and Applications - Istanbul, Turkey (15-17 Dec. 2005)] 2005 ICSC Congress on Computational Intelligence Methods and Applications - Automated Learning of Genome Sequences by Computational Intelligence

Mary Qu Yang,, Yang, J.Y., Zuojie Luo,, Ersoy, O.K.

Year:

2005

Language:

english

File:

PDF, 557 KB

english, 2005

39

[IEEE 2005 ICSC Congress on Computational Intelligence Methods and Applications - Istanbul, Turkey (15-17 Dec. 2005)] 2005 ICSC Congress on Computational Intelligence Methods and Applications - Learning from Genome Sequences utilizing Computational Intelligence

Yang, J.Y., Mary Qu Yang,, Ersoy, O.

Year:

2005

Language:

english

File:

PDF, 3.34 MB

english, 2005

40

PREFACE

Emmert-Streib*, Frank, Arabnia, Hamid R., Yang, Mary Qu

Journal:

Applied Artificial Intelligence

Year:

2008

Language:

english

File:

PDF, 68 KB

english, 2008

41

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids

Li, Guo-Zheng, Meng, Hao-Hua, Yang, Mary Qu, Yang, Jack Y.

Year:

2007

Language:

english

File:

PDF, 919 KB

english, 2007

42

[IEEE 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing - Shanghai, China (2009.08.3-2009.08.5)] 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing - Redundant Gene Selection Based on Particle Swarm Optimization

Chen, Su-Fen, Zeng, Xue-Qiang, Li, Guo-Zheng, Yang, Jack Y., Yang, Mary Qu

Year:

2009

Language:

english

File:

PDF, 866 KB

english, 2009

43

[IEEE 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops - San Jose, CA, USA (2007.11.2-2007.11.4)] 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops - An investigation into the feasibility of detecting microscopic disease using machine learning

Qu Yang, Mary, Yang, Jack Y.

Year:

2007

Language:

english

File:

PDF, 508 KB

english, 2007

44

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - An Overview of Bidirectional Promoters

Yang, Mary Qu, Elnitski, Laura L.

Year:

2007

Language:

english

File:

PDF, 627 KB

english, 2007

45

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification

Li, Guo-Zheng, Zeng, Xue-Qiang, Yang, Jack Y., Yang, Mary Qu

Year:

2007

Language:

english

File:

PDF, 1.47 MB

english, 2007

46

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning

Yang, Mary Qu, Yang, Jack Y.

Year:

2007

Language:

english

File:

PDF, 111 KB

english, 2007

47

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling

Yang, Jack Y., Niemierko, Andrzej, Yang, Mary Qu, Deng, Youping

Year:

2007

Language:

english

File:

PDF, 2.08 MB

english, 2007

48

[IEEE 2008 IEEE International Conference on Bioinformatics and Biomeidcine Workshops, BIBMW - Philadelphia, PA, USA (2008.11.3-2008.11.5)] 2008 IEEE International Conference on Bioinformatics and Biomeidcine Workshops - High-performance computing for drug design

Qu Yang, Mary, Yang, Jack Y.

Year:

2008

Language:

english

File:

PDF, 52 KB

english, 2008

49

[IEEE 2005 ICSC Congress on Computational Intelligence Methods and Applications - Istanbul, Turkey (15-17 Dec. 2005)] 2005 ICSC Congress on Computational Intelligence Methods and Applications - Automated Identifying Intrinsic Unstructured Regions in Proteins - A Software Tool

Yang, J.Y., Mary Qu Yang,, Zuojie Luo,, Ersoy, O.

Year:

2005

Language:

english

File:

PDF, 1.42 MB

english, 2005

50

[IEEE 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing - Shanghai, China (2009.08.3-2009.08.5)] 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing - Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology

Xiong, Kaiqi, Suh, Sang C., Yang, Jack Y., Yang, Mary Qu, Arabnia, Hamid

Year:

2009

Language:

english

File:

PDF, 873 KB

english, 2009

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